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A novel Benzimidazole moiety-appended Schiff base derivative: Synthesis, characterization and the investigation of photophysical and chemosensor properties

Year 2018, Volume: 5 Issue: 3, 1375 - 1386, 01.09.2018
https://doi.org/10.18596/jotcsa.478665

Abstract

In this study, we synthesized a novel
benzimidazole-based Schiff base;
(E)-4,4'-methylenebis(2-((E)-(((1H-benzo[d]imidazol-2-yl)methyl)imino)methyl)phenol)
(3) was synthesized by the
condensation of 5,5'-methylenebis(2-hydroxybenzaldehyde) (1) and (1H-benzo[d]imidazol-2-yl)methanamine.HCl salt (2). This Schiff base derivative was
reported for the first time and was fully characterized by FT-IR, UV–vis, 1H-NMR,
13C-NMR and mass spectroscopy. Electronic absorption and
fluorescence titration studies of 3
with different metal cations in a DMF show a highly selective binding affinity
only toward and Zn2+ ion. The crystal
structure of 2, C8H13Cl2N3O,
has been determined by single crystal X-ray
diffraction method. The crystal structure of the title compound, C8H11N32+
×2(Cl)×H2O, consists of an organic 1H-benzoimidazol-3-ium
(C8H11N32+) cation, an inorganic
2(Cl) anion and one water (H2O) molecule. In the
cation of the title compound, C8H11N32+,
the benzimidazole ring system  is planar with a maximum deviation of -0.012
(3) Å. The crystal
belongs to monoclinic system, space group P21/c. The crystal packing is stabilized by intramolecular
N–H···O,
N–H···Cl, the intermolecular
N–H···Cl interactions link the molecules into a
two-dimensional network and between anions and the water molecules. π-π contacts between benzimidazole rings
[centroid–centroid distances = 3.4642 (2) Å,
3.5309 (2) Å and 3.5527 (2) Å] may further stabilize the structure.



 

References

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  • 2. El Rashedy AA, Aboul-Enein HY. Benzimidazole derivatives as potential anticancer agents. Mini-Rev. Med. Chem. 2013;13:399-407.
  • 3. El-masry AH, Fahmy HH, Abdelwahed SH. Synthesis and Antimicrobial Activity of Some New Benzimidazole Derivatives. Molecules. 2000;5:1429-38.
  • 4. Gaba M, Singh S, Mohan C. Benzimidazole: An emerging scaffold for analgesic and anti-inflammatory agents. Eur. J. Med. Chem. 2014;76:494-505.
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  • 6. Kus C, Kilcgil AG, Eke BC, Iscan M. Synthesis and antioxidant properties of some novel benzimidazole derivatives on lipid peroxidation in the rat liver. Arch Pharm. Res. 2004;27:156-63.
  • 7. Kathiravan MK, Salake AB, Chothe AS, Dudhe PB, Wat RP. The biology and chemistry of antifungal agents: A review. Bioorg Med. Chem. 2012;20:5678–98.
  • 8. Cetinkaya B, Özdemir I, Bruneau C, Dixneuf PH. Benzimidazole, Benzothiazole and Benzoxazole Ruthenium(II) Complexes; Catalytic Synthesis of 2,3-Dimethylfuran. Eur J Inorg. Chem. 2000;2000:29-32.
  • 9. Tong Y, Zheng S, Chen X. Structures, Photoluminescence and Theoretical Studies of Two ZnII Complexes with Substituted 2-(2-Hydroxyphenyl)benzimidazoles. Eur J Inorg Chem. 2005;2005:3734–41.
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  • 11. Arulmurugan S, Kavitha HP, Venkatraman BR. Biological Activities of Schiff Bae and Its Complexes: A Review. Rasayan J Chem. 2010;3: 385-410.
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  • 15. Carter KP, Young AM, Palmer AE. Fluorescent Sensors for Measuring Metal Ions in Living Systems Chem Rev. 2014;114: 4564−4601.
  • 16. Singh N, Jang DO. Benzimidazole-Based Tripodal Receptor: Highly Selective Fluorescent Chemosensor for Iodide in Aqueous Solution. Org Lett. 2007;9:1991-4.
  • 17. Lee DY, Singh N, Jang DO. A benzimidazole-based single molecular multianalyte fluorescent probe for the simultaneous analysis of Cu2+ and Fe3+. Tetrahedron Lett. 2010;51:1103–6.
  • 18. Lin H, Cheng P, Wanb C, Wu A, A turn-on and reversible fluorescence sensor for zinc ion. Analyst. 2012;137: 4415-7.
  • 19. Auld DS. Zinc coordination sphere in biochemical zinc sites. BioMetals. 2001;14:271.
  • 20. Perrin DD, Armarego WLF, Perrin DR. Purification of Laboratory Chemicals. Pergamon Press, New York:2013. 21. Lin CH, Feng YR, Dai KH, Chang HC, Juang TY. Synthesis of a benzoxazine with precisely two phenolic OH linkages and the properties of its high-performance copolymers. J Polym Sci Part A: Polym Chem. 2013;51:2686-94.
  • 22. Alasmary FAS, Snelling AM, Zain ME, Alafeefy AM, Awaad AS, Karodia N. Molecules. 2015;20:15206-23.
  • 23. STOE & Cie, X-AREA (Version 1.18) and X-RED32 (Version 1.04), STOE & Cie, Darmstadt, Germany;2002.
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  • 25. Farrugia LJ. ORTEP-3 for Windows- a version of ORTEP-III with a Graphical User Interface (GUI). J Appl Crystallogr. 1997;30:565.
  • 26. Spek AL. Structure validation in chemical crystallography. Acta Crystallogr. 2009;D65:148-55.
  • 27. Farrugia LJ. WinGX and ORTEP for Windows: an update. J Appl Crystallogr. 1999;32:837-838.
  • 28. Özçelik S, Gül A. Boronic ester of a phthalocyanine precursor with a salicylaldimino moiety. J Organomet. Chem. 2012;699:87-91.
  • 29. Zheng S, Cai Y, Zhanga X, Sua C. 2,2'-(Iminodimethylene)bis(1H-benzimidazolium)(1+) chloride. Acta Cryst. 2005;E61:642-4.
  • 30. Cui Y. 2,2’,2’’-(Nitrilotrimethylene)tris(1Hbenzimidazol-3-ium) trinitrate. Acta Cryst. 2011;E67:625-6.
  • 31. Li G, Yang F, Yao C. 2-Amino-1H-benzoimidazol-3-ium 4,4,4- trifluoro-1,3-dioxo-1-phenylbutan-2-ide. Acta Cryst. 2008;E64:2460.
  • 32. Jana A, Sukul PK, Mandal SK, Konar S, Ray S, Das K, et al. A novel 2,6-diformyl-4-methylphenol based chemosensor for Zn(II) ions by ratiometric displacement of Cd(II) ions and its application for cell imaging on human melanoma cancer cells. Analyst, 2014;139:495–504.
  • 33. Sen P, Atmaca GY, Erdogmus A, Dege N, Genc H, Atalay Y, Yildiz SZ. The Synthesis, Characterization, Crystal Structure and Photophysical Properties of a New Meso-BODIPY Substituted Phthalonitrile. J Fluoresc. 2015;25:1225-34.
  • 34. Brouwer AM. Standards for photoluminescence quantum yield measurements in solution (IUPAC Technical Report). Pure Appl Chem. 2011;83:2213-28.
Year 2018, Volume: 5 Issue: 3, 1375 - 1386, 01.09.2018
https://doi.org/10.18596/jotcsa.478665

Abstract

References

  • 1. Preston PN. Chemistry of Heterocyclic Compounds: Benzimidazoles and Cogeneric Tricyclic Compounds. John Wiley&Sons, Inc, New York; 2008
  • 2. El Rashedy AA, Aboul-Enein HY. Benzimidazole derivatives as potential anticancer agents. Mini-Rev. Med. Chem. 2013;13:399-407.
  • 3. El-masry AH, Fahmy HH, Abdelwahed SH. Synthesis and Antimicrobial Activity of Some New Benzimidazole Derivatives. Molecules. 2000;5:1429-38.
  • 4. Gaba M, Singh S, Mohan C. Benzimidazole: An emerging scaffold for analgesic and anti-inflammatory agents. Eur. J. Med. Chem. 2014;76:494-505.
  • 5. Patil A, Ganguly S, Surana S. A systematic Review of benzimidazole Derivatives as an Antiulcer Agent. Rasayan J Chem. 2008;1:447-60.
  • 6. Kus C, Kilcgil AG, Eke BC, Iscan M. Synthesis and antioxidant properties of some novel benzimidazole derivatives on lipid peroxidation in the rat liver. Arch Pharm. Res. 2004;27:156-63.
  • 7. Kathiravan MK, Salake AB, Chothe AS, Dudhe PB, Wat RP. The biology and chemistry of antifungal agents: A review. Bioorg Med. Chem. 2012;20:5678–98.
  • 8. Cetinkaya B, Özdemir I, Bruneau C, Dixneuf PH. Benzimidazole, Benzothiazole and Benzoxazole Ruthenium(II) Complexes; Catalytic Synthesis of 2,3-Dimethylfuran. Eur J Inorg. Chem. 2000;2000:29-32.
  • 9. Tong Y, Zheng S, Chen X. Structures, Photoluminescence and Theoretical Studies of Two ZnII Complexes with Substituted 2-(2-Hydroxyphenyl)benzimidazoles. Eur J Inorg Chem. 2005;2005:3734–41.
  • 10. Verdasco G, Martin MA, Castillo B, Lopez-Alvarado P, Menendez JC. Solvent effects on the fluorescent emission of some new benzimidazole derivatives. Anal Chim Acta. 1995;303:73-8.
  • 11. Arulmurugan S, Kavitha HP, Venkatraman BR. Biological Activities of Schiff Bae and Its Complexes: A Review. Rasayan J Chem. 2010;3: 385-410.
  • 12. Przybylski P, Huczynski A, Pyta K, Brzezinski B, Bartl F. Biological Properties of Schiff Bases and Azo Derivatives of Phenols. Curr Org. Chem. 2009;13:124-48.
  • 13. Wang L, Qin W, Liu W. A sensitive Schiff-base fluorescent indicator for the detection of Zn2+. Inorg Chem Commun. 2010;13:1122–25.
  • 14. Silva AP, Gunaratne HQN, Gunnlaugsson T, Huxley AJM, McCoy CP, Rademacher JT, Rice TE, Signaling Recognition Events with Fluorescent Sensors and Switches. Chem Rev. 1997;97:1515–66.
  • 15. Carter KP, Young AM, Palmer AE. Fluorescent Sensors for Measuring Metal Ions in Living Systems Chem Rev. 2014;114: 4564−4601.
  • 16. Singh N, Jang DO. Benzimidazole-Based Tripodal Receptor: Highly Selective Fluorescent Chemosensor for Iodide in Aqueous Solution. Org Lett. 2007;9:1991-4.
  • 17. Lee DY, Singh N, Jang DO. A benzimidazole-based single molecular multianalyte fluorescent probe for the simultaneous analysis of Cu2+ and Fe3+. Tetrahedron Lett. 2010;51:1103–6.
  • 18. Lin H, Cheng P, Wanb C, Wu A, A turn-on and reversible fluorescence sensor for zinc ion. Analyst. 2012;137: 4415-7.
  • 19. Auld DS. Zinc coordination sphere in biochemical zinc sites. BioMetals. 2001;14:271.
  • 20. Perrin DD, Armarego WLF, Perrin DR. Purification of Laboratory Chemicals. Pergamon Press, New York:2013. 21. Lin CH, Feng YR, Dai KH, Chang HC, Juang TY. Synthesis of a benzoxazine with precisely two phenolic OH linkages and the properties of its high-performance copolymers. J Polym Sci Part A: Polym Chem. 2013;51:2686-94.
  • 22. Alasmary FAS, Snelling AM, Zain ME, Alafeefy AM, Awaad AS, Karodia N. Molecules. 2015;20:15206-23.
  • 23. STOE & Cie, X-AREA (Version 1.18) and X-RED32 (Version 1.04), STOE & Cie, Darmstadt, Germany;2002.
  • 24. Sheldrick GM. A short history of SHELX. Acta Crystallogr., Sect. A: Found. Crystallogr. 2008;64:112-122.
  • 25. Farrugia LJ. ORTEP-3 for Windows- a version of ORTEP-III with a Graphical User Interface (GUI). J Appl Crystallogr. 1997;30:565.
  • 26. Spek AL. Structure validation in chemical crystallography. Acta Crystallogr. 2009;D65:148-55.
  • 27. Farrugia LJ. WinGX and ORTEP for Windows: an update. J Appl Crystallogr. 1999;32:837-838.
  • 28. Özçelik S, Gül A. Boronic ester of a phthalocyanine precursor with a salicylaldimino moiety. J Organomet. Chem. 2012;699:87-91.
  • 29. Zheng S, Cai Y, Zhanga X, Sua C. 2,2'-(Iminodimethylene)bis(1H-benzimidazolium)(1+) chloride. Acta Cryst. 2005;E61:642-4.
  • 30. Cui Y. 2,2’,2’’-(Nitrilotrimethylene)tris(1Hbenzimidazol-3-ium) trinitrate. Acta Cryst. 2011;E67:625-6.
  • 31. Li G, Yang F, Yao C. 2-Amino-1H-benzoimidazol-3-ium 4,4,4- trifluoro-1,3-dioxo-1-phenylbutan-2-ide. Acta Cryst. 2008;E64:2460.
  • 32. Jana A, Sukul PK, Mandal SK, Konar S, Ray S, Das K, et al. A novel 2,6-diformyl-4-methylphenol based chemosensor for Zn(II) ions by ratiometric displacement of Cd(II) ions and its application for cell imaging on human melanoma cancer cells. Analyst, 2014;139:495–504.
  • 33. Sen P, Atmaca GY, Erdogmus A, Dege N, Genc H, Atalay Y, Yildiz SZ. The Synthesis, Characterization, Crystal Structure and Photophysical Properties of a New Meso-BODIPY Substituted Phthalonitrile. J Fluoresc. 2015;25:1225-34.
  • 34. Brouwer AM. Standards for photoluminescence quantum yield measurements in solution (IUPAC Technical Report). Pure Appl Chem. 2011;83:2213-28.
There are 33 citations in total.

Details

Primary Language English
Subjects Chemical Engineering
Journal Section Articles
Authors

Pınar Şen 0000-0002-3181-9890

Salih Zeki Yıldız

Necmi Dege 0000-0003-0660-4721

Göknur Yaşa Atmaca This is me

Ali Erdoğmuş

Mustafa Dege This is me

Publication Date September 1, 2018
Submission Date November 5, 2018
Acceptance Date December 25, 2018
Published in Issue Year 2018 Volume: 5 Issue: 3

Cite

Vancouver Şen P, Yıldız SZ, Dege N, Atmaca GY, Erdoğmuş A, Dege M. A novel Benzimidazole moiety-appended Schiff base derivative: Synthesis, characterization and the investigation of photophysical and chemosensor properties. JOTCSA. 2018;5(3):1375-86.