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3-hidroksi-4-hidroksimiinometil-5-hidroksimetil-1,2-dimetilpiridinyum iyodid molekülünün geometrik yapısının incelenmesi

Year 2017, Volume: 21 Issue: 3, 564 - 571, 01.06.2017
https://doi.org/10.16984/saufenbilder.306864

Abstract

Bu
çalı
şmada, 3-hidroksi-4-hidroksiiminometil-5-hidroksimetil-1,2-dimetilpiridinyum
iyodid (1A)
[C9H13IN2O3] molekülünün üç boyutlu moleküllerin yaklaşık geometrileri
GaussView programında çizilip GAUSSIAN 09 programında Yoğunluk Fonksiyonu teorisi/ Becke-3- Lee-Yang-Parr (DFT/B3LYP)
metodunda LanL2DZ temel setinde teorik olarak g
az fazında ve taban durumunda hesaplandı. 1A molekülünün geometrik yapısını belirleyip
titreşim özellikleri incelendi. Ek olarak moleküler sınır orbital (HOMO ve
LUMO) enerjileri hesaplandı ve bu enerjilerden belirlenen elektronik özellikler
(dipol moment, toplam enerji, elektronegatiflik, kimyasal sertlik ve kimyasal yumuşaklık),
lineer olmayan optik özellikler
(polarizebilite
ve anizotropik polarizebilite), mulliken atomik yükler populasyon analizi,
entalpi, gibbs serbest enerjileri ve entropi gibi termodinamik özellikleri hesaplandı.

References

  • [1] H. Thorn, Jr. Dunning, Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen, 1988.
  • [2] Marijana Juki´c, Antonija Hergold-Brundi´c, Mario Cetina, Ante Nagl and Jasna Vorkapi´c-Furaˇc, Structural Chemistry, Vol. 14, No. 6, December 2003.
  • [3] Sch¨one, K. Dissertation, Fakult¨at f¨ur Chemie und Pharmazie, Albert-Ludwigs Universit¨at, Freiburg im Breisgau, Germany, 1967.
  • [4] Viscontini, M.; Ebn¨other, C.; Karrer, P. Helv. Chim Acta 1951, 34, 1834.
  • [5] GaussView, Version 5, Roy Dennington, Todd Keith and John Millam, Semichem Inc., Shawnee Mission KS, 2009. [6] Gaussian 09, Revision A.1, M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, G. Scalmani, V. Barone, B. Mennucci, G. A. Petersson, H. Nakatsuji, M. Caricato, X. Li, H. P. Hratchian, A. F. Izmaylov, J. Bloino, G. Zheng, J. L. Sonnenberg, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, T. Vreven, J. A. Montgomery, Jr., J. E. Peralta, F. Ogliaro, M. Bearpark, J. J. Heyd, E. Brothers, K. N. Kudin, V. N. Staroverov, R. Kobayashi, J. Normand, K. Raghavachari, A. Rendell, J. C. Burant, S. S. Iyengar, J. Tomasi, M. Cossi, N. Rega, J. M. Millam, M. Klene, J. E. Knox, J. B. Cross, V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, R. L. Martin, K. Morokuma, V. G. Zakrzewski, G. A. Voth, P. Salvador, J. J. Dannenberg, S. Dapprich, A. D. Daniels, O. Farkas, J. B. Foresman, J. V. Ortiz, J. Cioslowski, and D. J. Fox, Gaussian, Inc., Wallingford CT, 2009.
  • [7] A. D. Becke, Density-functional exchange-energy approximation with correct asymptotic behavior, Physical Review A, 1988, pp. 3098-3100.
  • [8] C. Lee, W. Yang, R. G. Parr, Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density, Phys. Rev. B, 1998, pp. 785-789.
  • [9] K. Fukui, Role of Frontier Orbitals in Chemical Reactions, Science, 1982, pp. 747-754.
  • [10] PEARSON R., J.Org.Chem., 1989; 54, 1423-1430.
  • [11] R. S. Mulliken, J Chem Phys 1955, pp. 1833-1841.
  • [12] A. E. Reed, R. B. Weinstock, F. Weinhold, J Chem Phys 1985, pp. 735.
  • [13] A. E. Reed, F. Weinhold, J Chem Phys 1985, pp. 1736.
  • [14] A.E. Reed, L. A. Curtiss, F. Weinhold, Chem Rev 1988, pp. 899.
  • [15 ]P. Hohenberg and W. Kohn, Inhomogeneous electron gas, Phys. Rev. B, 1964, pp. 864-871.

Molecular structure investigation of 3-hydroxy-4-hydroxyiminomethyl-5-hydroxymethyl-1,2-dimethylpyridinium iodide molecule

Year 2017, Volume: 21 Issue: 3, 564 - 571, 01.06.2017
https://doi.org/10.16984/saufenbilder.306864

Abstract

In this study, the ground state of 3-hydroxy-4-hydroxyiminomethyl-5-hydroxymethyl-1,2-dimethylpyridinium
iodide
[C9H13IN2O3] (1A) molecule of the theoretical molecular structure were performed
by using Gaussian 09 program. B3LYP levels of density functional theory with
the LanL2DZ basis set have been used to perform above-mentioned calculations. The
molecular structure of 1A molecule was determined and the vibrational
properties were investigated. In addition,
the molecular
frontier orbital (
HOMO-LUMO) energies, the electronic properties (total energy, dipole
moment, electronegativity, chemical hardness and softness), nonlinear optical
(the mean polarizability (<α>) and the anisotropy of the polarizability
(Δα)) properties, Mulliken atomic charges
and thermodynamic
parameters were investigated using DFT quantum
chemical calculations.

References

  • [1] H. Thorn, Jr. Dunning, Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen, 1988.
  • [2] Marijana Juki´c, Antonija Hergold-Brundi´c, Mario Cetina, Ante Nagl and Jasna Vorkapi´c-Furaˇc, Structural Chemistry, Vol. 14, No. 6, December 2003.
  • [3] Sch¨one, K. Dissertation, Fakult¨at f¨ur Chemie und Pharmazie, Albert-Ludwigs Universit¨at, Freiburg im Breisgau, Germany, 1967.
  • [4] Viscontini, M.; Ebn¨other, C.; Karrer, P. Helv. Chim Acta 1951, 34, 1834.
  • [5] GaussView, Version 5, Roy Dennington, Todd Keith and John Millam, Semichem Inc., Shawnee Mission KS, 2009. [6] Gaussian 09, Revision A.1, M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, G. Scalmani, V. Barone, B. Mennucci, G. A. Petersson, H. Nakatsuji, M. Caricato, X. Li, H. P. Hratchian, A. F. Izmaylov, J. Bloino, G. Zheng, J. L. Sonnenberg, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, T. Vreven, J. A. Montgomery, Jr., J. E. Peralta, F. Ogliaro, M. Bearpark, J. J. Heyd, E. Brothers, K. N. Kudin, V. N. Staroverov, R. Kobayashi, J. Normand, K. Raghavachari, A. Rendell, J. C. Burant, S. S. Iyengar, J. Tomasi, M. Cossi, N. Rega, J. M. Millam, M. Klene, J. E. Knox, J. B. Cross, V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, R. L. Martin, K. Morokuma, V. G. Zakrzewski, G. A. Voth, P. Salvador, J. J. Dannenberg, S. Dapprich, A. D. Daniels, O. Farkas, J. B. Foresman, J. V. Ortiz, J. Cioslowski, and D. J. Fox, Gaussian, Inc., Wallingford CT, 2009.
  • [7] A. D. Becke, Density-functional exchange-energy approximation with correct asymptotic behavior, Physical Review A, 1988, pp. 3098-3100.
  • [8] C. Lee, W. Yang, R. G. Parr, Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density, Phys. Rev. B, 1998, pp. 785-789.
  • [9] K. Fukui, Role of Frontier Orbitals in Chemical Reactions, Science, 1982, pp. 747-754.
  • [10] PEARSON R., J.Org.Chem., 1989; 54, 1423-1430.
  • [11] R. S. Mulliken, J Chem Phys 1955, pp. 1833-1841.
  • [12] A. E. Reed, R. B. Weinstock, F. Weinhold, J Chem Phys 1985, pp. 735.
  • [13] A. E. Reed, F. Weinhold, J Chem Phys 1985, pp. 1736.
  • [14] A.E. Reed, L. A. Curtiss, F. Weinhold, Chem Rev 1988, pp. 899.
  • [15 ]P. Hohenberg and W. Kohn, Inhomogeneous electron gas, Phys. Rev. B, 1964, pp. 864-871.
There are 14 citations in total.

Details

Subjects Metrology, Applied and Industrial Physics
Journal Section Research Articles
Authors

Hacer Pir Gümüş

Yusuf Atalay

Publication Date June 1, 2017
Submission Date July 28, 2016
Acceptance Date March 30, 2017
Published in Issue Year 2017 Volume: 21 Issue: 3

Cite

APA Pir Gümüş, H., & Atalay, Y. (2017). Molecular structure investigation of 3-hydroxy-4-hydroxyiminomethyl-5-hydroxymethyl-1,2-dimethylpyridinium iodide molecule. Sakarya University Journal of Science, 21(3), 564-571. https://doi.org/10.16984/saufenbilder.306864
AMA Pir Gümüş H, Atalay Y. Molecular structure investigation of 3-hydroxy-4-hydroxyiminomethyl-5-hydroxymethyl-1,2-dimethylpyridinium iodide molecule. SAUJS. June 2017;21(3):564-571. doi:10.16984/saufenbilder.306864
Chicago Pir Gümüş, Hacer, and Yusuf Atalay. “Molecular Structure Investigation of 3-Hydroxy-4-Hydroxyiminomethyl-5-Hydroxymethyl-1,2-Dimethylpyridinium Iodide Molecule”. Sakarya University Journal of Science 21, no. 3 (June 2017): 564-71. https://doi.org/10.16984/saufenbilder.306864.
EndNote Pir Gümüş H, Atalay Y (June 1, 2017) Molecular structure investigation of 3-hydroxy-4-hydroxyiminomethyl-5-hydroxymethyl-1,2-dimethylpyridinium iodide molecule. Sakarya University Journal of Science 21 3 564–571.
IEEE H. Pir Gümüş and Y. Atalay, “Molecular structure investigation of 3-hydroxy-4-hydroxyiminomethyl-5-hydroxymethyl-1,2-dimethylpyridinium iodide molecule”, SAUJS, vol. 21, no. 3, pp. 564–571, 2017, doi: 10.16984/saufenbilder.306864.
ISNAD Pir Gümüş, Hacer - Atalay, Yusuf. “Molecular Structure Investigation of 3-Hydroxy-4-Hydroxyiminomethyl-5-Hydroxymethyl-1,2-Dimethylpyridinium Iodide Molecule”. Sakarya University Journal of Science 21/3 (June 2017), 564-571. https://doi.org/10.16984/saufenbilder.306864.
JAMA Pir Gümüş H, Atalay Y. Molecular structure investigation of 3-hydroxy-4-hydroxyiminomethyl-5-hydroxymethyl-1,2-dimethylpyridinium iodide molecule. SAUJS. 2017;21:564–571.
MLA Pir Gümüş, Hacer and Yusuf Atalay. “Molecular Structure Investigation of 3-Hydroxy-4-Hydroxyiminomethyl-5-Hydroxymethyl-1,2-Dimethylpyridinium Iodide Molecule”. Sakarya University Journal of Science, vol. 21, no. 3, 2017, pp. 564-71, doi:10.16984/saufenbilder.306864.
Vancouver Pir Gümüş H, Atalay Y. Molecular structure investigation of 3-hydroxy-4-hydroxyiminomethyl-5-hydroxymethyl-1,2-dimethylpyridinium iodide molecule. SAUJS. 2017;21(3):564-71.